Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0849
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0508 - 29623173-29623301,29623410-29623575,29623691-296237...    30   1.6  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   2.8  
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    28   4.8  
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646...    28   6.4  

>02_05_0508 -
           29623173-29623301,29623410-29623575,29623691-29623794,
           29623888-29624004,29624315-29624371,29624475-29624519,
           29624610-29624720,29624788-29624861,29624967-29625060,
           29625744-29625797,29626040-29626123,29626244-29626311,
           29626400-29626588,29627193-29627305,29627525-29627697,
           29628444-29628533
          Length = 555

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
 Frame = +1

Query: 82  DPKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPAKSA 261
           + ++ L+   ++  N ++V  +VC  YH+  +G    +A  +NL     K RC     S+
Sbjct: 367 ETEKLLAQLVEDEMNRRMVLGHVC--YHILAAGLNGYMATVTNLKSPANKWRCGAAPISS 424

Query: 262 AKAVLHQCSYPHSTNIWK---HDKTSDTTFKGLYEKLLGKF*SFILN 393
              V      P +T I K   H  T D   K  +E L     SF+++
Sbjct: 425 MMTVKRWSRGPAATQIGKPAVHMATVDLKGKA-FELLRNNSTSFLID 470


>04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,
            1285523-1287609
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
 Frame = +1

Query: 19   VECGTRVVPGEENVNTGPCNCDP-KQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSL 195
            V+C  R +   E   + P   +P K+  +L     +NGK         + MCV    L+ 
Sbjct: 800  VQCDKRSLDMVEQTPSPPATTEPPKKLANLVMVRKANGK---------WRMCVDFTDLNK 850

Query: 196  ACPSNLFYDPQKER-CDFPAKSAAKAVLHQCSYPHSTNIWKHD--KTSDTTFKGLY 354
            ACP + F  P+ ++  D  A     + L   S  H  ++ K D  KTS  T  G++
Sbjct: 851  ACPKDHFPLPRIDQLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTSFITPFGVF 906


>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 241 DFPAKSAAKAVLHQCSYPHSTNIWKHD 321
           ++ AK AAK + H  + PHS +I+  D
Sbjct: 614 EYEAKVAAKRIFHNVAKPHSKHIYLSD 640


>12_01_1055 -
           10861665-10861829,10862827-10863171,10864374-10864682,
           10864813-10864968,10865669-10866117,10869275-10869359,
           10869944-10870300,10870672-10871076
          Length = 756

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 140 PIMCVATITCASAVKHYHSLVRLI 211
           P+ C+A ++  SAV+H+H   R++
Sbjct: 3   PLCCIAPVSLDSAVEHHHQPPRIL 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,090
Number of Sequences: 37544
Number of extensions: 265979
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)