Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0849
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17020.2 68417.m02567 transcription factor-related contains w...    28   5.4  
At4g17020.1 68417.m02568 transcription factor-related contains w...    28   5.4  
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    28   5.4  
At2g31070.1 68415.m03791 TCP family transcription factor, putati...    28   5.4  
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI...    27   9.4  

>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 564 YNNFDKGVKQDRIINFISYN 505
           YN FD G+  D+II F+  N
Sbjct: 344 YNAFDNGITSDQIITFLQQN 363


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 564 YNNFDKGVKQDRIINFISYN 505
           YN FD G+  D+II F+  N
Sbjct: 344 YNAFDNGITSDQIITFLQQN 363


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
            protein similar to DEMETER protein [Arabidopsis thaliana]
            GI:21743571; contains Pfam profile PF00730: HhH-GPD
            superfamily base excision DNA repair protein
          Length = 1309

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +1

Query: 157  HYHMCVSGKTLSLACPSNLFYDPQKERCDF--PAKSAAKAVLHQCSYPHSTNIWKHDKTS 330
            HYHM   GK        N    P K  C     A+++A+  L +      T++  H++ S
Sbjct: 936  HYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRS 995


>At2g31070.1 68415.m03791 TCP family transcription factor, putative
           similar to TCP1 protein (GI:20269127) {Lupinus albus}
           and cycloidea (GI:12002867) [Lycopersicon esculentum]
          Length = 361

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +1

Query: 112 QEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPAKSAAKAVLHQCSY 291
           +E SNG  + ++   H+H   S  TL  +    +F   Q+++         +  L    +
Sbjct: 237 EERSNGGFMVNHHPHHHHHQPSMMTLLNSQQQQVFLGGQQQQ-------QQRGTLQSSLF 289

Query: 292 PHSTNIWKHDKTS 330
           PHS   W H +T+
Sbjct: 290 PHSFRSWDHHQTT 302


>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
           nearly identical to C-terminal binding protein
           ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
           contains Pfam profile PF02826: D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain
          Length = 636

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
 Frame = +1

Query: 16  NVECGTRVVPGEENVNTGPC----NCDPKQAL-----SLCAQEGSNG 129
           N EC   + PG   VNTG C    +C  KQ L     + CA +G+ G
Sbjct: 242 NAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALDGAEG 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,605
Number of Sequences: 28952
Number of extensions: 225660
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)