Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0848
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    24   1.2  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    24   1.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.6  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    24   1.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.0  

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 133 VFNFTSRYVSSLIYLYVTMDYWQWLI 56
           VF F  + V S+   ++ +  WQW +
Sbjct: 180 VFLFEEKQVQSMPQCWIDLQTWQWKV 205


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 568 VGCSKN*NI-HMKILHRRMIHFKV*FNLNLYSLHVCEMIFMVLNQYYKIAIFI 413
           VG S   ++   K+L  R    ++      YS   CE+ F+    YY I I+I
Sbjct: 24  VGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYI 76


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 362 TVKFKFYKSQLCIRWKFD 415
           TV   FY + +C+ +KFD
Sbjct: 462 TVFANFYDAMICVAYKFD 479


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 406 PPDAELRFVKFEFHSHWKTLINKKEKLHLIFMNKKFKKR 290
           PP   LRF   E   HW+ +++  +  ++ +    F+++
Sbjct: 9   PPLGHLRFKAPELPEHWEGVLDATKPGNVCYQRDLFRQK 47


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 673 YTKDEAYLRYQVFTSKFNALVRPKNTCKYES 581
           Y  D  Y+  +VF +  NA++ P  + + ES
Sbjct: 443 YNGDPNYISPEVFPNTNNAIMTPPASVQTES 473


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 673 YTKDEAYLRYQVFTSKFNALVRPKNTCKYES 581
           Y  D  Y+  +VF +  NA++ P  + + ES
Sbjct: 391 YNGDPNYISPEVFPNTNNAIMTPPASVQTES 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,165
Number of Sequences: 336
Number of extensions: 3935
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)