Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0848
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 785 GYADFIEYNNNWTSNSSHPSCADELVPYSTCVTAVSN 675
           G  D +EY   WT    H SC    +P +  V  +S+
Sbjct: 448 GMQDLVEYLKKWTVKGDHSSCMRVTMPINCYVYYLSD 484


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 181 LVFDSSIFPYTYLEALVFNFTSRYVSSL 98
           +VF +S+F YTY    +FN+ + + S L
Sbjct: 91  IVFSASVFSYTYTVVELFNYLNLFSSDL 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,393,876
Number of Sequences: 59808
Number of extensions: 433220
Number of successful extensions: 1028
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)