Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0848
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-8|AAD14692.1|  349|Caenorhabditis elegans Seven tm rece...    29   3.9  
AC006722-14|AAK68413.1|  349|Caenorhabditis elegans Seven tm rec...    29   3.9  

>AF125952-8|AAD14692.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 76 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = -2

Query: 673 YTKDEAYLRYQVFTS---KFNAL-VRPKNTCKYESIYAEVGCSKN*NIHMKILHRRMIHF 506
           Y ++E  + Y +  +   +F AL   P NT ++ S+Y  VG     ++H  ++       
Sbjct: 162 YVREEILINYGLVITEVPRFLALPYNPDNTVRWSSVYYFVGAVSIVSVHYAVIF--YYGL 219

Query: 505 KV*FNLNLYSLHVCEMIFMVLNQYYKIAIFIKFPP 401
           K+ FN+    L        +  Q++K  +F    P
Sbjct: 220 KMHFNMKQQLLKFSSKNRKLQRQFFKALVFQSIGP 254


>AC006722-14|AAK68413.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 265 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = -2

Query: 673 YTKDEAYLRYQVFTS---KFNAL-VRPKNTCKYESIYAEVGCSKN*NIHMKILHRRMIHF 506
           Y ++E  + Y +  +   +F AL   P NT ++ S+Y  VG     ++H  ++       
Sbjct: 162 YVREEILINYGLVITEVPRFLALPYNPDNTVRWSSVYYFVGAVSIVSVHYAVIF--YYGL 219

Query: 505 KV*FNLNLYSLHVCEMIFMVLNQYYKIAIFIKFPP 401
           K+ FN+    L        +  Q++K  +F    P
Sbjct: 220 KMHFNMKQQLLKFSSKNRKLQRQFFKALVFQSIGP 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,334
Number of Sequences: 27780
Number of extensions: 355109
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)