Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0847
         (863 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    58   9e-11
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   1.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   7.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   9.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   9.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 58.0 bits (134), Expect = 9e-11
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +1

Query: 784 LQDVYKIGGIGTVPVGRVETGVLKPG 861
           LQDVYKIGGIGTVPVGRVETGVLKPG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPG 26


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 852 QHTSFN-SADGHGTNTTDFVYVLQ 784
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 302 GNIVLASFELPESNIDVIP 246
           GNI +  + +P  NI+ +P
Sbjct: 151 GNIAMELWNMPRENIEPLP 169


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 638 CCLRAIQKWARKRQQLGCSQSS*CMRIL 555
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 638 CCLRAIQKWARKRQQLGCSQSS*CMRIL 555
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 570 MYEDTSFLISSNLGSLYGGSVNPFCLLL 487
           ++ D S ++   LG  Y G  + +CLL+
Sbjct: 262 LWVDLSHMMQQ-LGKAYSGMYSMYCLLI 288


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 570 MYEDTSFLISSNLGSLYGGSVNPFCLLL 487
           ++ D S ++   LG  Y G  + +CLL+
Sbjct: 262 LWVDLSHMMQQ-LGKAYSGMYSMYCLLI 288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,865
Number of Sequences: 336
Number of extensions: 4860
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)