Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0846
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   2.0  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    23   4.6  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    23   4.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 342 ILFKIGKKRSASKLTHRYSPEFLAEPSQWVAFPIR 446
           I+F + ++R    L H Y P  L     W+AF I+
Sbjct: 205 IVFNL-RRRLGYHLFHTYIPSALIVVMSWIAFWIK 238


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 76  SREHRIIPSHYIEQIPVPVYY 96


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 309 SREHRIIPSHYIEQIPVPVYY 329


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP+P+Y+
Sbjct: 325 SREHRIIPSHYIEQIPVPVYY 345


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 833 RPYDVETNSIVF 798
           R YDV+T+SI+F
Sbjct: 425 RKYDVQTDSIIF 436


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 360 KKRSASKLTHRYSPEFLAEPSQWVAFPIR 446
           K+R    L H Y P  L     WV+F I+
Sbjct: 241 KRRLGYYLFHTYIPTCLIVIMSWVSFWIK 269


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 257 SRE--IPPDINIKQIPLPIYF 313
           SRE  I P   I+QIP P+Y+
Sbjct: 324 SREHRIIPSHYIEQIPAPVYY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,667
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 44
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)