Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0846
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related...    28   8.8  

>At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related
           contains PF00560: Leucine Rich Repeat; similar to F-box
           protein Fbl2 (GI:6164721) [Homo sapiens]
          Length = 241

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -3

Query: 292 LFYINIGWDFSGDLLHNYYSHIEHNLISVR*SCGE-NESGY*K*FV---ITARFTLSVVF 125
           L  INIG DF  D L  Y +    NL S+R  C E  + G+ +  V   +     +S + 
Sbjct: 30  LLEINIG-DFGSDSLLTYIAERSSNLRSLRLMCSEITDDGFVQAVVKLPMLEELEVSGIS 88

Query: 124 KSTLNFKVCALRLKALKTNLKN 59
            S  + K+  L    LKT + N
Sbjct: 89  LSGESMKLAGLSCPNLKTLMLN 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,660
Number of Sequences: 28952
Number of extensions: 290794
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)