Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0845
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0603 - 4350124-4350590,4350995-4353608                           33   0.37 
03_05_1129 - 30595580-30595771,30596119-30597162                       31   1.1  
05_01_0545 - 4756266-4757510                                           29   3.5  
01_01_0490 + 3620523-3623403,3623524-3623996                           29   3.5  
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018     29   4.6  

>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 86  PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQG 187
           PE  R+R+ E   LSN  + G  P ++G+ P+ G
Sbjct: 349 PEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLG 382


>03_05_1129 - 30595580-30595771,30596119-30597162
          Length = 411

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = -1

Query: 427 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 305
           A SLR V G   G I +EL S   PP  S  E R  VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 83  VPEA-ERIRKAEEAGLSNTRIVGGSPATLGQFP 178
           VP+A  R+R+  E  LSN R+VG  P+ +   P
Sbjct: 138 VPDALRRLRRLHELDLSNNRLVGAFPSAVLDLP 170


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 86  PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLI-TIVVNG--QPRTGVC 238
           PE     K    GL+ T I G  PATLGQ      L I T +++G   P  G C
Sbjct: 220 PEIGNCSKLTMLGLAETSISGPLPATLGQLKNLNTLAIYTALLSGPIPPELGRC 273


>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
          Length = 1040

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 32  TLPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLIT 202
           TL L  N ++G +     P   R+ + +   LSN  + G  P+T+GQ P+   L ++
Sbjct: 84  TLDLSYNLLHGEIP----PTIGRLSRMKYLDLSNNSLQGEMPSTIGQLPWLSTLYMS 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,649,372
Number of Sequences: 37544
Number of extensions: 560949
Number of successful extensions: 1734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)