Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0845
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   6e-04
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +2

Query: 509 NFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSGRXG 688
           +F GS     G+G TS +G +  + +L    L+++    C   +  ++ ++ +C   + G
Sbjct: 286 SFAGSDVTVLGWGHTSFNGML--SHILQKTTLNMLTQVECYKYYGNIMVNA-MCAYAK-G 341

Query: 689 VGTCRGDSGGPLV--VTRNNRPILIGI 763
              C+ DSGGP++    R  R + IGI
Sbjct: 342 KDACQMDSGGPVLWQNPRTKRLVNIGI 368



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 134 TRIVGGSPATLGQFPYQGGL 193
           +RIVGG+   + +FP   G+
Sbjct: 159 SRIVGGTNTGINEFPMMAGI 178


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  YLTKYGVPEAERIRKAEEAGLSN 133
           YLTK+ VPE       E+ GL++
Sbjct: 208 YLTKHNVPEQRLNYFTEDVGLNH 230


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  YLTKYGVPEAERIRKAEEAGLSN 133
           YLTK+ VPE       E+ GL++
Sbjct: 208 YLTKHNVPEQRLNYFTEDVGLNH 230


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 56  VYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGS 154
           V  +L+     E   IRK +E+   +  I+GGS
Sbjct: 236 VSNFLSSTRTAETGTIRKCDESSPHDQVIIGGS 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,175
Number of Sequences: 438
Number of extensions: 5862
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)