Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0845
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20060.1 68414.m02511 kinesin motor protein-related                 31   0.72 
At2g46180.1 68415.m05742 intracellular protein transport protein...    30   1.7  
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr...    28   6.7  
At5g53320.1 68418.m06627 leucine-rich repeat transmembrane prote...    28   8.8  
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat...    28   8.8  
At5g24560.1 68418.m02900 F-box family protein / SKP1 interacting...    28   8.8  
At2g41990.1 68415.m05194 expressed protein                             28   8.8  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    28   8.8  

>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 693 PTPXRPLVHKFEDCKTKGKANVQTKLFITSRF 598
           PTP    V   +DC   G +NVQTK  I+ RF
Sbjct: 781 PTPSPEQVEVSQDCINSGLSNVQTKSAISRRF 812


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 485 KSDRIDCIRQSNGTG*VNDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKND 321
           K  R+D  R SN      +G    N S+R      NR  +N+G  A + +GT+ND
Sbjct: 124 KESRLDLSRASNNNAIKGNGDHSPNRSQRSPTNWKNRNQMNNG-IASKPNGTEND 177


>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 966

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 35  LPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFP 178
           L L EN +YG +  + +    ++++ E   L N ++ G  PATL Q P
Sbjct: 124 LDLSENLLYGDIP-FSI---SKLKQLETLNLKNNQLTGPVPATLTQIP 167


>At5g53320.1 68418.m06627 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 601

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 485 SKWTGITRNFVGSSAVASGFGLTSSSGSITTNQV--LSHVNLDVINNFVCTFAFPFVLQS 658
           +KWTG+T N   SS  A     T   G I  + +  LS++   ++++   +  FP  LQ+
Sbjct: 53  TKWTGVTCNSDHSSVDALHLAATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQA 112


>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1073

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 619 VIYHVEVHVTEDLVCRYRSRAAGQTKARSDCRGSNKVSCNSC 494
           +  H  V  TE   C    +A G T+ R +C     V C+SC
Sbjct: 613 ICLHKWVSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSC 654


>At5g24560.1 68418.m02900 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 251

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 460 LIQSIRSLFQVDRNYKKLCWILGSRFW--LWSDQ-QLWIYNDKPSPQSRE 600
           LI+  R+ F +++   K CW+L +R    +W D  + WI+   P  +  E
Sbjct: 77  LIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEE 126


>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 159 LLSDNFLIRVVY*SPSSLMDNHARASAEFACYTNRLLTA 275
           +LS N  +R+ Y +PS+    H  AS     Y+N LL++
Sbjct: 169 MLSLNSTVRIYYRNPSTFFAVHVTASPLLLHYSNLLLSS 207


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 351 GGTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTI 479
           GGT    SS+V   +W+PAT  +  A   LP P  L     TI
Sbjct: 293 GGTDAVFSSLVHSFSWNPATFLH--AYTCLPLPYALRQATGTI 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,622
Number of Sequences: 28952
Number of extensions: 424858
Number of successful extensions: 1236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)