Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   0.88 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   6.2  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 379 SIPSSSSPFDAQAFSWKAFSSLGH 308
           SI +S +PF  Q F+    S LGH
Sbjct: 245 SIHNSINPFLGQGFAVPGLSPLGH 268


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 51  HRVAGPRNPPNSSCSY 98
           H+  GPR+PP+ S  +
Sbjct: 352 HQNFGPRHPPDCSMEF 367


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 160 PHSGKSRALPTQTYIPCSRSHQPLHVVS 243
           P     R+ P Q+ +  S  H+PL + +
Sbjct: 224 PTKSSPRSSPVQSDVSLSPVHEPLLITT 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,233
Number of Sequences: 336
Number of extensions: 1788
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)