Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   129   1e-31
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   129   2e-31
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   2.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.1  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    24   8.0  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   8.0  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  129 bits (312), Expect = 1e-31
 Identities = 57/89 (64%), Positives = 69/89 (77%)
 Frame = +2

Query: 2   FNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 181
           FNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN A
Sbjct: 63  FNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAA 122

Query: 182 PCLRRRTYRAHGRINPYMSSPCHIEYVSA 268
           P  RRRTYRAHGR+  Y+SSP HIE + A
Sbjct: 123 PKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  129 bits (311), Expect = 2e-31
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = +2

Query: 2   FNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 181
           FNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN A
Sbjct: 63  FNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAA 122

Query: 182 PCLRRRTYRAHGRINPYMSSPCHIEYVSA 268
           P  RRRTYRAHGR+  Y+SSP HIE + A
Sbjct: 123 PKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 145 QASYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPH 252
           Q+ +   S K RA   +T +  ++S   HQ +H +S PH
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPH 371


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 177 RFT*MWSITSLSTSKVLLSAFDS-AFLNN 94
           R+  +W++++L  + VL+  FD   F+NN
Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINN 879


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 56  GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQ 169
           G  P   + FLLQ+L + +  A N  L +DR++  + Q
Sbjct: 81  GLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQ 118


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 62  WPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 157
           WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 9   WPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,401
Number of Sequences: 5004
Number of extensions: 26799
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)