Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   128   2e-30
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   127   4e-30
09_02_0608 + 11194889-11195134,11195185-11195406                       30   0.83 
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   1.4  
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    27   4.4  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   4.4  
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...    27   7.7  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  128 bits (308), Expect = 2e-30
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   GGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 184
           GGVGR AQAK +    QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A 
Sbjct: 65  GGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQ 124

Query: 185 CLRRRTYRAHGRINPYMSSPCHIEYV 262
             RRRTYRAHGRINPYMSSPCHIE +
Sbjct: 125 KQRRRTYRAHGRINPYMSSPCHIELI 150


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  127 bits (306), Expect = 4e-30
 Identities = 60/86 (69%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   GGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 184
           GGVGR AQ K   +  QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A 
Sbjct: 77  GGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQ 136

Query: 185 CLRRRTYRAHGRINPYMSSPCHIEYV 262
             RRRTYRAHGRINPYMSSPCH+E +
Sbjct: 137 KQRRRTYRAHGRINPYMSSPCHVELI 162


>09_02_0608 + 11194889-11195134,11195185-11195406
          Length = 155

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 177 ARPAYADVHTVLTVASTPTCRLPATSSMSQR 269
           AR A +D+ T+L + + P  RLP TSS  +R
Sbjct: 24  ARRALSDLQTILGLGAAPPQRLPQTSSGQRR 54


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 68   KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 193
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 202 IPCSRSHQPLHVVSLPHRVCLSEREDAVARVAPTDDAP 315
           +P SRS + + VVS+P R   S +     RV+P    P
Sbjct: 485 VPRSRSTENIDVVSVPPRHSSSHQPSIHVRVSPNTSPP 522


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 309 CPSEEKAFQEKACASKGEDDE 371
           C  EE+A  EK C   GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128


>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 5   NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI 166
           + G+G C +  + G        +S +  +   R+ ES A NKT + D + + ++
Sbjct: 383 SSGIGVCIEFWKIGKAMHVEIDRSGKIPMLRFRDRESYAQNKTKEYDAIAMKYL 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,386
Number of Sequences: 37544
Number of extensions: 198719
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)