Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              118   2e-27
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 30   0.85 
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)                     28   2.6  
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           27   7.9  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  118 bits (284), Expect = 2e-27
 Identities = 57/77 (74%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
 Frame = +2

Query: 2   FNGGVGRCAQAKQFGT--TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 175
           +NGGVGR AQAK      +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN
Sbjct: 63  YNGGVGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVN 122

Query: 176 RAPCLRRRTYRAHGRIN 226
            AP +RRRTYRAHGRIN
Sbjct: 123 EAPSMRRRTYRAHGRIN 139


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 32  AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 211
           AKQ    +G WP     FL+  + N     D  +      +   IQ N+  C++++ Y+A
Sbjct: 202 AKQTCVVEGAWPLVENHFLIVQVTNVPL-VDGSSATATNKITVIIQENKDSCVQQKIYKA 260


>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
          Length = 502

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 317 AGASSVGATLATASSRSLRHTRCGRETTCR 228
           A   SVG+T A  S++++  T+C R +T R
Sbjct: 212 ANTDSVGSTSAPGSAQAMPATQCARSSTTR 241


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 146 CQRPKFCCQRLIQRSSITARGIR-RISWASD 57
           C+ PK+C Q L++R     R +  R+ W  D
Sbjct: 366 CENPKYCSQALLERIVEPERVLSFRVPWLDD 396


>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 180 RPAYADVHTVLTVASTPTCRLPATSSMSQRTR 275
           +  +ADV T+L    T  C L   S  SQRTR
Sbjct: 2   KTCHADVTTLLGKKGTQMCILALLSCRSQRTR 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,061
Number of Sequences: 59808
Number of extensions: 236877
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)