Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   147   2e-36
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   100   8e-22
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  147 bits (357), Expect = 2e-36
 Identities = 71/116 (61%), Positives = 82/116 (70%)
 Frame = +2

Query: 2   FNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 181
           F+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 65  FHGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRA 124

Query: 182 PCLRRRTYRAHGRINPYMSSPCHIEYVSANAKXXXXXXXXXXXXQRRKSFPRKSLR 349
             LRRRTYRAHGRINPYMSSPCHIE + A  +            + +K   RK  R
Sbjct: 125 AKLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSKPTDDAAPKVKKESKRKQRR 180


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 50/87 (57%), Positives = 57/87 (65%)
 Frame = +2

Query: 89  LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEYVSA 268
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIE + A
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 269 NAKXXXXXXXXXXXXQRRKSFPRKSLR 349
             +            + +K   RK  R
Sbjct: 126 EKEDVVSKPTDDAAPKVKKESKRKQRR 152


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 251 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 123
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +2

Query: 62  WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 223
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 224 NPYMSSPCHIE 256
           NP+  SPC ++
Sbjct: 548 NPH--SPCMVD 556


>Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B8.4 protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 398 LLFNPYVYSLI---IFSF*RASFFLESFFFAGAS 306
           L F  + YSLI   IFSF   +++L + FFAG S
Sbjct: 118 LYFFTFPYSLIFTGIFSFMTLNWWLSAVFFAGES 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,862
Number of Sequences: 27780
Number of extensions: 161893
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)