Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0844
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 166 SGKSRALPTQTYIPCSRSHQPLHVVSLPHRVCLS 267
           SG++   P+Q  +   ++ + L  V +PH + ++
Sbjct: 144 SGETSVCPSQIVVFDLKNSKLLKQVKIPHDIAIN 177


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 259 ILDVAGRRHVGVDATVSTVCTS 194
           IL+ +G  HV  D + S VC +
Sbjct: 240 ILENSGVVHVAQDESTSLVCVA 261


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 259 ILDVAGRRHVGVDATVSTVCTS 194
           IL+ +G  HV  D + S VC +
Sbjct: 240 ILENSGVVHVAQDESTSLVCVA 261


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 200 TYRAHGRINPYMSSPC 247
           T +AH R+ P  SS C
Sbjct: 64  TAQAHHRLYPAFSSSC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,103
Number of Sequences: 438
Number of extensions: 1921
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)