Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0844
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 125 1e-29
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 125 1e-29
At3g15530.2 68416.m01969 expressed protein 29 0.92
At3g15530.1 68416.m01968 expressed protein 29 0.92
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 28 2.1
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 28 2.8
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 27 3.7
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 4.9
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 4.9
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 4.9
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 27 6.5
At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ... 27 6.5
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 125 bits (302), Expect = 1e-29
Identities = 61/88 (69%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 FNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNR 178
F GVGR AQAK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+
Sbjct: 63 FCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQ 122
Query: 179 APCLRRRTYRAHGRINPYMSSPCHIEYV 262
A RRRTYRAHGRINPYMS+PCHIE +
Sbjct: 123 AAKQRRRTYRAHGRINPYMSNPCHIELI 150
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 125 bits (302), Expect = 1e-29
Identities = 61/88 (69%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 FNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNR 178
F GVGR AQAK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+
Sbjct: 63 FCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQ 122
Query: 179 APCLRRRTYRAHGRINPYMSSPCHIEYV 262
A RRRTYRAHGRINPYMS+PCHIE +
Sbjct: 123 AAKQRRRTYRAHGRINPYMSNPCHIELI 150
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 0.92
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1
Query: 398 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 294
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 0.92
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1
Query: 398 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 294
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 77 RISWASDPVLCQTALLEHSD 18
R+SWASD +LCQ L D
Sbjct: 9 RVSWASDSMLCQVKLFLSDD 28
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 14 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 193
+ C AKQ Q R + FL L+RN N + ++V I+ +V A L
Sbjct: 374 ISSCENAKQDKYMQNRLVRLVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLF 433
Query: 194 R 196
R
Sbjct: 434 R 434
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 45 AQHRVAGPRNPPNSSCSY 98
AQ A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 162 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 76
W + ++ + + L A S F+NNC +NSA
Sbjct: 57 WLVPAIVVANIALFAI-SMFINNCPKNSA 84
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 50 TQGRWPKKSAEFLLQLLRNAESN 118
+ RWPK E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 50 TQGRWPKKSAEFLLQLLRNAESN 118
+ RWPK E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 53 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 157
+G+ P+++ EF+LQLL+ N+ N DV L +
Sbjct: 778 EGKSPREAVEFILQLLK-YNDNSGNSYSDVFWLAV 811
>At1g32240.1 68414.m03966 myb family transcription factor (KAN2)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI2 (KAN2) GI:15723594
Length = 388
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 159 SITSLSTSKVLLSAFDSAFLNNCKRNSADFLGQRPCVVPNC 37
S+ S STSK + F L+N + P ++PNC
Sbjct: 55 SLVSNSTSKTINHPFQDLSLSNISHHQQQQQHHHPQLLPNC 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,427
Number of Sequences: 28952
Number of extensions: 150181
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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