Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0843
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    29   1.5  
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    27   6.1  

>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
            2875909-2875947,2876309-2876354,2877380-2877922,
            2878827-2880847,2880972-2881215,2881642-2881684,
            2881923-2881962,2883580-2883675,2883712-2883759,
            2883964-2884290
          Length = 1498

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 118  MLKKIRLEKLCVNVYITQHSL 56
            +LKK RLEKL VN+Y+++  +
Sbjct: 1263 LLKKPRLEKLIVNIYVSKDGM 1283


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
 Frame = +2

Query: 167  IYDRWRSIYVCLSELHNLH----------TFIKIPLVTEESVTGFTSS 280
            + D W  +  CLS   +LH          +F+ +PLV  E  T  +SS
Sbjct: 859  LQDSWEHVLTCLSRFEHLHLLGEGAPTDASFLTVPLVESEDKTQKSSS 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,475,474
Number of Sequences: 37544
Number of extensions: 125176
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)