Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0843
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)          29   1.6  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
          Length = 679

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 92  FFQSYFF*HATIVHFPKGPYIIVPSIYDRWRSIYVCLSEL--HNLHTFIKIPLVT 250
           FF    + H + +   K  YI +  +  R R IYV L E+  H L  F  +P+ T
Sbjct: 181 FFDRLRYVHLSTLKVFKNRYIFIYYVQSRLREIYVTLFEIGAHVLPCFRVMPVAT 235


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 163  WYYDIRTFRKMYNCSMLKKIRLEKL 89
            W YD   F K+Y C   K ++++++
Sbjct: 1907 WTYDNECFLKLYTCRQGKDVKVQQM 1931


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,385
Number of Sequences: 59808
Number of extensions: 168780
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)