Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0843
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    31   0.34 
U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 114 NMLQLYIFRKVLIS*YHQFTIDGAVSTYV*VNYIIYIRLSKSH 242
           N++ L   R+ L++ YH   +D  +   + +N + YIR S+SH
Sbjct: 97  NLMLLDAHREDLMANYHTSYLDPTIDEVIRINKVDYIRKSQSH 139


>U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical
           protein F41D9.1 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   VKHHLFSWDL 30
           +KHHLFSWDL
Sbjct: 817 IKHHLFSWDL 826


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 154 DIRTFRKMYNCSMLKKIRLEKLCVNVYITQHSLYYNKFM 38
           D+ T +K Y   ++  I L +L   +Y    ++ +NKF+
Sbjct: 831 DVATCQKQYKDQLMVSIILPQLDFKIYAETPAMDFNKFL 869


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,319,711
Number of Sequences: 27780
Number of extensions: 138183
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)