Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0843
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   6.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   6.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 WRSIYVCLSELHNLHTFIKIPLV 247
           WRS  VC    +N++ ++  P +
Sbjct: 56  WRSYVVCDVAYNNVNNWLWTPFI 78


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 YNCTFSERSLYHSTINL 171
           YN  ++ + LY++ IN+
Sbjct: 314 YNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 YNCTFSERSLYHSTINL 171
           YN  ++ + LY++ IN+
Sbjct: 325 YNNNYNSKKLYYNIINI 341


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 189 STYV*VNYIIYIRLSK 236
           +TYV +NY+ Y + SK
Sbjct: 169 ATYVDINYVEYPQNSK 184


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 206  HSNIRRYCAIYR 171
            H N+ ++C I+R
Sbjct: 1680 HHNVNKHCTIHR 1691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,834
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)