Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0842
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.4  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    26   5.5  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   9.6  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 407 LDLTKKNACITYNIPKRNTHVIYVTSK 327
           LD   +  CI Y+IP  N H++   SK
Sbjct: 170 LDQFAEQICIDYDIPLHNVHIVQNISK 196


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 7/26 (26%), Positives = 20/26 (76%)
 Frame = +1

Query: 343 ITCVFRFGMLYVMHAFFFVKSSYNLR 420
           ++C F + ++Y++++ F++ + Y+LR
Sbjct: 267 LSCHFYYSIIYLLNSMFYLLTFYSLR 292


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 570 LIIYFIIPDVSLIIIYIFLLRIH 502
           L ++FII     +I Y+F +RIH
Sbjct: 428 LFVFFIILVCLAVIFYVFNIRIH 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,197
Number of Sequences: 5004
Number of extensions: 51055
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)