Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0842
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 619 LKPSDRNILNLFSLKIFNNLFYNSRCFFN-YYIH 521
           LK  D  +  +    + +NL+YNS    N YY++
Sbjct: 245 LKEVDNKVYGMALSPVTHNLYYNSPSSENLYYVN 278


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 567 IIYFIIPDVSLIIIYIFLLRIHLNGNTLL 481
           +++F++P   +I++YI L+ I L  + +L
Sbjct: 227 MLFFVLPMTIIIVLYI-LIAIKLRRSRML 254


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 567 IIYFIIPDVSLIIIYIFL-LRI 505
           I++F+IP V + ++YI + LRI
Sbjct: 211 ILFFLIPMVFIAVLYIRIGLRI 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,178
Number of Sequences: 438
Number of extensions: 4026
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)