Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0840
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 137 8e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 137 8e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 36 0.003
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.31
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 0.93
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 1.6
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.6
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 3.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.6
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 25 6.6
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 8.7
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 137 bits (331), Expect = 8e-34
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +1
Query: 1 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
SLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTV
Sbjct: 74 SLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTV 133
Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
RRQAVDVSPLRRVNQA+ L+ GAR
Sbjct: 134 RRQAVDVSPLRRVNQALALITIGAR 158
Score = 85.4 bits (202), Expect = 3e-18
Identities = 39/45 (86%), Positives = 45/45 (100%)
Frame = +3
Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
EAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 159 EAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 137 bits (331), Expect = 8e-34
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +1
Query: 1 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
SLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTV
Sbjct: 74 SLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTV 133
Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
RRQAVDVSPLRRVNQA+ L+ GAR
Sbjct: 134 RRQAVDVSPLRRVNQALALITIGAR 158
Score = 85.4 bits (202), Expect = 3e-18
Identities = 39/45 (86%), Positives = 45/45 (100%)
Frame = +3
Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
EAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 159 EAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 35.9 bits (79), Expect = 0.003
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 25 NGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 141
+GKK A +IV A II TGENP+ VL AI P
Sbjct: 136 DGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.31
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 42 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 140
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 0.93
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 64 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 216
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 316 QLRVHLTPTPSKRRTSWSVLLNPTV 390
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 217 VNQAIWLLCTGARRLHSEILKQSQSVLQMN*LMQLRVHLTPT 342
+NQ LC+ A +++L++++ VLQ + R +LTPT
Sbjct: 301 LNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPT 342
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 134 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 250
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 3.8
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 82 LLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARRL 261
LL+G+N ++ +T N G + DS+ + T + + SP + N C G R+
Sbjct: 261 LLSGDNANEIFLTKYSNGGWQTDSSPF-LSHTAAVEDLQWSPSEK-NVFSSCSCDGTFRI 318
Query: 262 HSEILKQSQSVLQMN 306
KQ S L +N
Sbjct: 319 WDVRNKQKTSALTVN 333
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 303 ELINAAKGSSNSYAIKKKDELER 371
E +N+ + NS ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 70 EIIHLLTGENPLQVLVTAIINSGPREDSTR 159
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 204 TLAPSQPSNLAFVHRCTEAAFRNIKTIAECVADELINAAKGS 329
T + +Q N A RC F+ +T+ + +A+ L+N + S
Sbjct: 41 TCSRNQIVNQAESERCPIDPFQTFETLVDVLAEVLVNVSSES 82
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 229 IWLLCTGARRLHS 267
+WL C+GA +LHS
Sbjct: 513 VWLECSGAYQLHS 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,516
Number of Sequences: 5004
Number of extensions: 32595
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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