Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0840
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   151   3e-37
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          151   3e-37
06_03_0188 - 17691582-17692241                                         33   0.13 
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    27   4.9  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   6.5  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   6.5  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  151 bits (365), Expect = 3e-37
 Identities = 72/85 (84%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           SLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70  SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVD+SPLRRVNQAI+LL TGAR
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGAR 154



 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/45 (91%), Positives = 45/45 (100%)
 Frame = +3

Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
           E+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 155 ESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  151 bits (365), Expect = 3e-37
 Identities = 72/85 (84%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           SLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 71  SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 130

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVD+SPLRRVNQAI+LL TGAR
Sbjct: 131 RRQAVDISPLRRVNQAIYLLTTGAR 155



 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/45 (91%), Positives = 45/45 (100%)
 Frame = +3

Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
           E+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 156 ESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 169 AGTVRRQAVDVSPLRRVNQA--IWLLCTGARRLHSEILKQSQSVLQMN*LMQLRVHLTPT 342
           AGT  R+ +  +   R   A   WLL  G  + H+    + Q +L +   +  R H TP 
Sbjct: 102 AGTCTRRVIVAAAPPRATPAHDAWLLILGLHQTHAW---RPQLLLSLR--LHWRRHATPW 156

Query: 343 PSKRRTSWSVLL 378
           PS  R +WS+ L
Sbjct: 157 PSSTRNAWSLSL 168


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 260 SLRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 132
           S R P  + +I    RR+G + +  RR+ P +P     +R PE
Sbjct: 52  SSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 7    MMHGRNNGKKLMAVRIVKHAFEIIHLLTG 93
            ++HG  N ++++AV  +K   +I+HLL G
Sbjct: 1336 VIHGVVNIERMVAVLKIKDGLDILHLLRG 1364


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 160 IGRAGTVRR--QAVDVSPLRRVNQAIWLLCTGARRLHSEI 273
           +GRAG +R     + V P++  N+ +W    GA R+HS +
Sbjct: 439 LGRAGCIREAYDFIMVMPIKP-NERVWGALLGACRIHSNM 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,822
Number of Sequences: 37544
Number of extensions: 216621
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)