Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0840
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               171   3e-43
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)                       33   0.10 
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.40 
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 27   6.6  
SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)                    27   8.7  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  171 bits (415), Expect = 3e-43
 Identities = 80/85 (94%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 143 SMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 202

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 203 RRQAVDVSPLRRVNQAIWLLCTGAR 227



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 47/64 (73%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   E+AFRNIK+IAEC+ADELINAAKGSSNSYAIKKKDELERVA
Sbjct: 209 VSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVA 268

Query: 378 KSNR 389
           KSNR
Sbjct: 269 KSNR 272


>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
          Length = 513

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
 Frame = +1

Query: 79  HLLTGENPLQVLVTAIIN----SGP--REDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLL 240
           + L+ +NP+ V V A IN    SGP  +EDST        R Q +D++   +  + I  +
Sbjct: 119 YCLSDDNPMNVDVEADINNIAGSGPTEKEDSTSATDIVDYRHQ-LDINSDEKGPKIIESV 177

Query: 241 CTGARRLHSEILKQSQSVLQMN*LMQLRVHLTPTPSKRR 357
            TGA +LH + +   Q  L      +++ H TP   K R
Sbjct: 178 ATGANKLHLQRISAEQCKL------KIKQHFTPENVKVR 210


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 279 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 380
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 269 SECSLRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPELI 126
           S+ + R P    +IA   R+   T  A ++T P+RP   ++ +G  L+
Sbjct: 456 SKDTRRRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLM 503


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 207 LAP-SQPSNLAFVHRCTEAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAK 380
           LAP ++P+ L  V    E   R  KT+  C+ D L  A     +    +KK E ER+ K
Sbjct: 447 LAPVAKPTGLDPVAILKERENRQAKTLPYCMPDMLNKAVMNYHSVTDREKKKEEERIEK 505


>SB_7910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 228 NLAFVHRCTEAAFRNIKTIAECVADELINAAK 323
           NL+ VHRC ++  RN+ +  + +A     +AK
Sbjct: 342 NLSIVHRCDDSIIRNMMSTVQEIAFAFSYSAK 373


>SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)
          Length = 129

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 187 QAVDVSPLRRVNQAIWLLCTGARRLHSEILKQSQSVLQ 300
           Q VDV  L+RVNQ+    CT      S+  ++S  +LQ
Sbjct: 34  QCVDVQALQRVNQSSKSRCTPITHGPSDYTQRSLRLLQ 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,583
Number of Sequences: 59808
Number of extensions: 260715
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)