Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0840
         (432 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5 prot...   172   4e-43
BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5 pr...   172   4e-43
BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5 pr...   172   4e-43
AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5 va...   172   4e-43
AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5 pr...   172   4e-43
AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5 pr...    91   1e-18
AB209803-1|BAD93040.1|  107|Homo sapiens ribosomal protein S5 va...    69   7e-12

>U14970-1|AAA85658.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  172 bits (419), Expect = 4e-43
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 134

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 135 RRQAVDVSPLRRVNQAIWLLCTGAR 159



 Score = 92.3 bits (219), Expect = 6e-19
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVA
Sbjct: 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVA 200

Query: 378 KSNR 389
           KSNR
Sbjct: 201 KSNR 204


>BC018151-1|AAH18151.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  172 bits (419), Expect = 4e-43
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 134

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 135 RRQAVDVSPLRRVNQAIWLLCTGAR 159



 Score = 92.3 bits (219), Expect = 6e-19
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVA
Sbjct: 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVA 200

Query: 378 KSNR 389
           KSNR
Sbjct: 201 KSNR 204


>BC015405-1|AAH15405.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  172 bits (419), Expect = 4e-43
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 134

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 135 RRQAVDVSPLRRVNQAIWLLCTGAR 159



 Score = 92.3 bits (219), Expect = 6e-19
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVA
Sbjct: 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVA 200

Query: 378 KSNR 389
           KSNR
Sbjct: 201 KSNR 204


>AK223106-1|BAD96826.1|  204|Homo sapiens ribosomal protein S5
           variant protein.
          Length = 204

 Score =  172 bits (419), Expect = 4e-43
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 134

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 135 RRQAVDVSPLRRVNQAIWLLCTGAR 159



 Score = 88.6 bits (210), Expect = 8e-18
 Identities = 47/64 (73%), Positives = 52/64 (81%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   EAAFRNIKTIAEC+ADELINAAKGSSN YAIKK+DELERVA
Sbjct: 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKRDELERVA 200

Query: 378 KSNR 389
           KSNR
Sbjct: 201 KSNR 204


>AB061853-1|BAB79493.1|  204|Homo sapiens ribosomal protein S5
           protein.
          Length = 204

 Score =  172 bits (419), Expect = 4e-43
 Identities = 82/85 (96%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTV
Sbjct: 75  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 134

Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
           RRQAVDVSPLRRVNQAIWLLCTGAR
Sbjct: 135 RRQAVDVSPLRRVNQAIWLLCTGAR 159



 Score = 92.3 bits (219), Expect = 6e-19
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 3/64 (4%)
 Frame = +3

Query: 207 LAPSQPSNLAFVHRCT---EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVA 377
           ++P +  N A    CT   EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVA
Sbjct: 141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVA 200

Query: 378 KSNR 389
           KSNR
Sbjct: 201 KSNR 204


>AB007149-1|BAA25815.1|   55|Homo sapiens ribosomal protein S5
           protein.
          Length = 55

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = +3

Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
           EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 11  EAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55


>AB209803-1|BAD93040.1|  107|Homo sapiens ribosomal protein S5
           variant protein.
          Length = 107

 Score = 68.9 bits (161), Expect = 7e-12
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = +1

Query: 1   SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 123
           S+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE  L  LV A
Sbjct: 12  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,743,836
Number of Sequences: 237096
Number of extensions: 1102490
Number of successful extensions: 6009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6009
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)