Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0840
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 52  IVKHAFEIIHLLTGENPLQVLVTAII 129
           +++HAFEI  +L    P+ +++   I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 425 LFIVKMT**YILTVGFSNTLQLVLLFDGVG 336
           +F +++    +LTVG     ++  LF G+G
Sbjct: 34  MFFMELALGQMLTVGGLGVFKIAPLFKGIG 63


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 425 LFIVKMT**YILTVGFSNTLQLVLLFDGVG-VR*TLSC 315
           +F+++++   ++T+G     ++  +F G+G     LSC
Sbjct: 72  MFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 425 LFIVKMT**YILTVGFSNTLQLVLLFDGVG-VR*TLSC 315
           +F+++++   ++T+G     ++  +F G+G     LSC
Sbjct: 125 MFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSC 162


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 51  YCQTCV*NYSLVNWRKP 101
           +CQ      S + WRKP
Sbjct: 24  FCQPTQRTMSKIQWRKP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,716
Number of Sequences: 438
Number of extensions: 2195
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)