Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0840
(432 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 148 2e-36
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 147 3e-36
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 147 3e-36
At1g59590.1 68414.m06702 expressed protein 28 3.1
At5g62420.1 68418.m07833 aldo/keto reductase family protein simi... 27 4.1
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2... 27 5.5
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 26 9.6
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase... 26 9.6
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 26 9.6
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 26 9.6
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 148 bits (358), Expect = 2e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
RRQAVD+SPLRRVNQAI+LL TGAR
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAR 162
Score = 89.0 bits (211), Expect = 1e-18
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 163 EAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 147 bits (356), Expect = 3e-36
Identities = 69/85 (81%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
RRQAVD+SPLRRVNQAI+L+ TGAR
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAR 162
Score = 89.0 bits (211), Expect = 1e-18
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 163 EAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 147 bits (356), Expect = 3e-36
Identities = 69/85 (81%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 180
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 181 RRQAVDVSPLRRVNQAIWLLCTGAR 255
RRQAVD+SPLRRVNQAI+L+ TGAR
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAR 162
Score = 89.0 bits (211), Expect = 1e-18
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 255 EAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 389
EAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 163 EAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 321 KGSSNSYAIKKKDELERVAKSNR 389
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
>At5g62420.1 68418.m07833 aldo/keto reductase family protein similar
to chalcone reductase [Sesbania rostrata][GI:2792155];
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 316
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 225 SNLAFVHRCTEAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDEL 365
S ++ VH+ + +R+ T ++E + A G + SY ++D+L
Sbjct: 30 STISAVHQAIKIGYRHFDTAKIYGSEEALGTALGQAISYGTVQRDDL 76
>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 783
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 137 PELIMAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPC 12
P+L++ + F+P+N I AC+ + + + +L L +PC
Sbjct: 3 PKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 302 ICNTLCDCFNISECSLRAPVHKSQIAWLTRRKGETSTA 189
ICN +CD F L H SQ A + R+ + S +
Sbjct: 247 ICNVVCDSFEKFTAHLSDIRHISQAAIVESRRAQASVS 284
>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
nearly identical to phosphoinositide-specific
phospholipase C GI:557880 from [Arabidopsis thaliana];
contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 526
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 325 VHLTPTPSKRRTSWSVLLNPTVKIY 399
VH T TP+ + TSW+ + N ++ Y
Sbjct: 223 VHTTRTPTVKETSWNRVANKILEEY 247
>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 816
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 217 VNQAIWLLCTGARRLHSEILKQSQSVLQMN*LMQLRVHLTPTPS 348
VN + +C ++ LK S+ N + QLR+ + P PS
Sbjct: 370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPS 413
>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 883
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 217 VNQAIWLLCTGARRLHSEILKQSQSVLQMN*LMQLRVHLTPTPS 348
VN + +C ++ LK S+ N + QLR+ + P PS
Sbjct: 370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQLRIVVKPKPS 413
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,344,893
Number of Sequences: 28952
Number of extensions: 173745
Number of successful extensions: 430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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