Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0839
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 36 0.006
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 32 0.055
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.68
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.68
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 29 0.68
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 28 1.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.6
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 27 2.7
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 26 3.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 3.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 8.4
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 25 8.4
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 8.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 8.4
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 25 8.4
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 35.5 bits (78), Expect = 0.006
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 264 KHTSEDNESYDRVISLEQKKRANKIASQLQAEITSATLADEALALPSIE--QQADQTERP 437
K TSEDN S+ ++ E + RA + + + + + + + + + E+
Sbjct: 123 KFTSEDNASFGELMEDESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSIAWKEKD 182
Query: 438 HELDTWRYKARNYIMYVPXGRSPRPAAEARTSPPEHKAKSSTL 566
+ TW Y+ +N +MY P ++ + E +A ++ L
Sbjct: 183 KSIKTWNYQPKNALMYTPETNHSSSLSQIKKQSTEIQADATGL 225
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 32.3 bits (70), Expect = 0.055
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 233 VISAVLSLVAFFVCLGASSLLVAGVHGRSMFGVSKVAGVLYGSVGGLF 90
V+S+V S+V +CLG + L +FG S VAG +Y G F
Sbjct: 83 VVSSVQSIV--LICLGYTCLKEVNAFPDKLFGYSVVAGDIYALTAGYF 128
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.68
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 169 TNNEDAPRQTKNATKDKTADITDNHSLDSFWPNTRARTTKATIE-LYRWSKR-SVQIK*H 342
T ++ P T N +K +A + N +S W + A TTK E ++SK+ S + K H
Sbjct: 84 TRSQYKPNSTSNPSKHTSAYASYNKGKNSKWSSPFASTTKKPQESSEKYSKKSSTRKKEH 143
Query: 343 RSFKP 357
+ KP
Sbjct: 144 FNKKP 148
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 120 GVIWFCRWSVPAILLS*FSKSLIVFVFC 37
G IWFC WS+ + S ++KS+I+F C
Sbjct: 118 GYIWFCIWSLIS-GFSYYAKSVIMFDVC 144
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.7 bits (61), Expect = 0.68
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 43 NKDYQRLRELTQ-KYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDK 219
+K YQR R Q KY GN P E T + TP +PAT R T N ++D
Sbjct: 105 HKVYQRGRGAKQSKYLGNGKPIEASQTEESSSTPP-----SPATKKSSKQRLTMN-SRDA 158
Query: 220 TAD 228
D
Sbjct: 159 ALD 161
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 27.9 bits (59), Expect = 1.2
Identities = 29/101 (28%), Positives = 41/101 (40%)
Frame = +1
Query: 22 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 201
EY+E K Q+ E K + +P P N P F+T I R N AP +T+
Sbjct: 62 EYIE----KQRQKKLEKMAKKAARKPIAPPSNAPPEFNTDFIKREMLSIPNY--APFETE 115
Query: 202 NATKDKTADITDNHSLDSFWPNTRARTTKATIELYRWSKRS 324
+ D T +T N + N R + E +W RS
Sbjct: 116 KSALDITI-MTYNVLAQT---NIRRSMFPHSGEALKWKNRS 152
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +1
Query: 1 EKLNAQNEYLEATENKDYQRLRELT-----QKYSGNRPPTEPYNTPA-TFDTPNIDRPCT 162
++L + NE L + +++ ++L+EL Q R E ++ A D P PCT
Sbjct: 346 KELASSNELLASVRDENTKKLKELQDIIEEQSKHMARLHREGFSEAAENNDKPKETMPCT 405
Query: 163 PATNNEDAPRQTKNATKDK 219
++ D T N +KDK
Sbjct: 406 YDSSLADDHSDTSNLSKDK 424
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 218 LSLVAFFVCLGASSLLVAGVHGRSMFGVS 132
LS+V FF CL A+ L H FG+S
Sbjct: 28 LSVVLFFNCLAATLYLHGYKHSSVFFGIS 56
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 163 PATNNEDAPRQTKNATKDKTADITDNHSLDSFWPNTRARTTKATIELYRWSKRSVQ 330
P+ N E+ P++TKN + + HS+ S N+ + + + R + S+Q
Sbjct: 2 PSLNQEETPKKTKNPYRKGHSRRQSRHSIPSDELNSNSSKSLNNDRISRTIENSLQ 57
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 73 TQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLD 252
T + G+RPP P ++ PN+ P P + + T + T +A HS
Sbjct: 348 TPQVQGSRPPPPPPMPAPIYNVPNV--PTVPTVSPNPFLQPTFSGTSQASAH-PSIHSQS 404
Query: 253 SFWPNTR 273
+ + NT+
Sbjct: 405 ATFNNTQ 411
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 13 AQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTP-NIDRPCTPATNNE--D 183
A+NE + A E R L +K NR + TP T + P N + T +
Sbjct: 283 ARNEEMLAMEKAGLGRKNSLIRKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLN 342
Query: 184 APRQTKNATKDKTADITDNHS 246
+P Q + + +D D+++
Sbjct: 343 SPSQLDPISNENESDTDDSNT 363
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 28 LEATENKDYQRLRELT-QKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKN 204
LE N RLR+ QK+ +PP+ +T + D T N D P+ +N
Sbjct: 95 LEVEFNGGDWRLRKYPGQKHINGKPPSNSNSTEDASKPTSSDTASVKETENSD-PKSAEN 153
Query: 205 ATKDKTADITDNHSLDSFWPNT 270
+ + T + + PNT
Sbjct: 154 EVLE--GETTQHSNNKEAHPNT 173
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 501 SPRPAAEARTSPPEHKAKSS 560
+P+P AEA PP+H S+
Sbjct: 239 APKPQAEAPAKPPKHPLASA 258
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 8.4
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = +3
Query: 288 SYDRVISLEQKKRANKIASQLQAEITSATLADEALALPSIEQQADQTERPHEL--DTWRY 461
+Y R+ +L + + SQ++ + A + LPS Q + +R L TW
Sbjct: 646 AYSRISNLHKSSKEKGKDSQVRVALHKENTALNNIVLPSGNLQRSEEKRRAALSGSTWHS 705
Query: 462 KARNYIMYVPXGRSPRPAAEARTSPPEHKAKSS 560
A N S P A R S + K S
Sbjct: 706 PAFNIFGVDDSEDSDSPWATDRGSRLYQRTKGS 738
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 267 HTSEDNESYDRVISLEQKKRANKIASQLQAEITSATLADEALALPSIEQQADQTERP--- 437
+ ++ E D++ SL + +++ QL+ ++ A +A A P++ A E+
Sbjct: 73 NNAQIGEMVDKISSLSLLE-TSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEE 131
Query: 438 --HELDTWRYKARNY 476
E TW K ++
Sbjct: 132 KKEEKTTWNLKLESF 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,205
Number of Sequences: 5004
Number of extensions: 47819
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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