Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0839
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 44 6e-05
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 44 6e-05
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 35 0.038
AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical... 32 0.27
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 31 0.47
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 31 0.47
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 31 0.47
U41272-7|AAY86277.1| 240|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 29 3.3
Z68302-5|CAA92633.2| 382|Caenorhabditis elegans Hypothetical pr... 28 4.4
U53335-4|AAL27231.1| 504|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical... 28 4.4
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical p... 27 7.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.7
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 27 7.7
AF016448-1|AAB65956.2| 477|Caenorhabditis elegans Temporarily a... 27 7.7
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Frame = +3
Query: 246 LRFFLAKHTSEDNESYDRVISLEQKKRANKIASQLQAE-------ITSATLADEALALPS 404
L +L K+TSEDN S++ + + +++ + +AE +T +A EA +
Sbjct: 168 LTSYLNKYTSEDNASFEELAKVMREREDARRPWVYKAEEEHNKNLVTRQAIAAEADVQLA 227
Query: 405 IEQQADQTE-RPHELDTWRYKARNYIMYVPXGRSPRPA 515
++ D + RP +D W YKA N +++ P G + PA
Sbjct: 228 LKHAVDADDNRPLNVDNWAYKAWNTVLFNPDGAALTPA 265
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +1
Query: 1 EKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNE 180
+K+ AQ EYLEA NKD +++EL K+ T T +F TP R T A +
Sbjct: 64 KKMQAQKEYLEAVANKDINKIKELQMKFCS----TGSVRTDRSFRTPITTRSTTEAPDVS 119
Query: 181 DAPRQTKNATKDKTADITD 237
T + T+ D
Sbjct: 120 SFDADTPGPSSASTSSAHD 138
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Frame = +3
Query: 246 LRFFLAKHTSEDNESYDRVISLEQKKRANKIASQLQAE-------ITSATLADEALALPS 404
L +L K+TSEDN S++ + + +++ + +AE +T +A EA +
Sbjct: 168 LTSYLNKYTSEDNASFEELAKVMREREDARRPWVYKAEEEHNKNLVTRQAIAAEADVQLA 227
Query: 405 IEQQADQTE-RPHELDTWRYKARNYIMYVPXGRSPRPA 515
++ D + RP +D W YKA N +++ P G + PA
Sbjct: 228 LKHAVDADDNRPLNVDNWAYKAWNTVLFNPDGAALTPA 265
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +1
Query: 1 EKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNE 180
+K+ AQ EYLEA NKD +++EL K+ T T +F TP R T A +
Sbjct: 64 KKMQAQKEYLEAVANKDINKIKELQMKFCS----TGSVRTDRSFRTPITTRSTTEAPDVS 119
Query: 181 DAPRQTKNATKDKTADITD 237
T + T+ D
Sbjct: 120 SFDADTPGPSSASTSSAHD 138
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 35.1 bits (77), Expect = 0.038
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +1
Query: 94 RPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLDSFWPNTR 273
RP + P T N + P T ++ D P T N T+++ AD D S D F P+
Sbjct: 12 RPGSVNEELPETEPEDNDELPETEPESDSDKPTVTSNKTENQVAD-EDYDSFDDFVPSQT 70
Query: 274 ARTTKATIELYRWSKRSVQ 330
+K ++ R K +V+
Sbjct: 71 HTASKIPVKNKRAKKCTVE 89
>AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical
protein Y60A3A.24 protein.
Length = 402
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 4 KLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNED 183
KLN Q + E+ + R + L + G R E + P + P+I+ +NNE
Sbjct: 60 KLNQQRAERQLVEHNAFHRAQALLLEDDGQRSIPEGHLMPLDYARPDIEDEPIIRSNNEI 119
Query: 184 A--PRQTKNATKDKTADITDNHS-LDSFWPNTRARTTKATIEL 303
Q K A K +D +N + ++ P +R +E+
Sbjct: 120 VIDTVQNKRAIKRPNSDFFENQTPAEAVAPKSRKMGNSEKLEI 162
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 22 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 201
E+L T N Q++ + S + PP EP TP TP TPA P
Sbjct: 374 EWLNGT-NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAA--APRPMSNN 430
Query: 202 NATKDKTADITDNHSL 249
N++ + + + HS+
Sbjct: 431 NSSSNNVPSVQEQHSV 446
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 22 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 201
E+L T N Q++ + S + PP EP TP TP TPA P
Sbjct: 374 EWLNGT-NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAA--APRPMSNN 430
Query: 202 NATKDKTADITDNHSL 249
N++ + + + HS+
Sbjct: 431 NSSSNNVPSVQEQHSV 446
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 22 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 201
E+L T N Q++ + S + PP EP TP TP TPA P
Sbjct: 374 EWLNGT-NAVPQKVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAA--APRPMSNN 430
Query: 202 NATKDKTADITDNHSL 249
N++ + + + HS+
Sbjct: 431 NSSSNNVPSVQEQHSV 446
>U41272-7|AAY86277.1| 240|Caenorhabditis elegans Hypothetical
protein T03G11.9 protein.
Length = 240
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 377 ECCRRDLGLKLRCYFICTLLLLQRYNSIVAFVVLARVFGQKESKLWLSVISAVL-SLVAF 201
+CCR D+ +K C+++ L+ + F + FG LWL + V ++VA
Sbjct: 87 KCCRGDVHVKRACFYVSISALV-----VCLFSTICMFFGVYTVNLWLDIFLIVANTVVAI 141
Query: 200 FVCLG 186
+ G
Sbjct: 142 LMMFG 146
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/86 (25%), Positives = 29/86 (33%)
Frame = +1
Query: 37 TENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKD 216
TE + T++ + P TP T T + TP T P T + T
Sbjct: 37 TEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTT-- 94
Query: 217 KTADITDNHSLDSFWPNTRARTTKAT 294
T T + S T TT AT
Sbjct: 95 STTTTTTPTTTTSTTTTTTTTTTTAT 120
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 43 NKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAP 189
N D R +T + PP PYN+ A + P TP + N AP
Sbjct: 327 NVDRPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPVPSTPISANSPAP 375
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 43 NKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAP 189
N D R +T + PP PYN+ A + P TP + N AP
Sbjct: 327 NVDRPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPVPSTPISANSPAP 375
>Z68302-5|CAA92633.2| 382|Caenorhabditis elegans Hypothetical
protein ZK792.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 347 LRCYFICTLL-LLQRYNSIVAFVVLARVFGQKESKLW 240
+R Y + +++ +L N+I FV++A GQK + W
Sbjct: 179 IRMYMVYSVIKILYLVNAIAQFVIIAIFLGQKRNLFW 215
>U53335-4|AAL27231.1| 504|Caenorhabditis elegans Hypothetical
protein C55C3.3 protein.
Length = 504
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 100 PTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLD 252
P P P+ P ++ TP T DAP +++A+ + +HS+D
Sbjct: 341 PIAPKPRPSPLQAPLLETLATPPTI--DAPTAAIETAIERSAEFSSSHSMD 389
>AF045642-11|AAC02584.1| 443|Caenorhabditis elegans Hypothetical
protein C17H12.5 protein.
Length = 443
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +1
Query: 70 LTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATK 213
L+ K S E TP F P P T AT DAP TK A K
Sbjct: 90 LSAKTSTPHKSIEAALTPVAFSPP----PATQATQAMDAPATTKTAVK 133
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +3
Query: 270 TSEDNESYDRVISLEQKKRANKIASQLQAEITSATLADEALALPSIEQQADQTERPHELD 449
T E +S D + + + EIT+ + E P+I++ A++T++ + D
Sbjct: 161 TQEKEKSKDETVPKQHAPSLKRQEGDKNPEITNPIVTPETDEFPTIDEDAEKTKKTEKKD 220
>Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical
protein Y69H2.9 protein.
Length = 314
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 263 GQKESKLWLSV--ISAVLSLVAFFVCLGA 183
G S LW + ISA+L L+AFFV +GA
Sbjct: 262 GTLTSVLWNRIDDISAILFLIAFFVFVGA 290
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/66 (28%), Positives = 23/66 (34%)
Frame = +1
Query: 100 PTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDNHSLDSFWPNTRAR 279
PT TP T T TP T A T KT T + + P T
Sbjct: 269 PTTTTTTPTTTPTTTT----TPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFD 324
Query: 280 TTKATI 297
T+K T+
Sbjct: 325 TSKCTV 330
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 278 LARVFGQKESKLWLSV-ISAVLSLVAFFVCLGA 183
L + ++ LW+ V + A+L LV FF C GA
Sbjct: 57 LVNEIAEYQASLWILVAVGALLFLVGFFGCCGA 89
>AF016448-1|AAB65956.2| 477|Caenorhabditis elegans Temporarily
assigned gene nameprotein 196 protein.
Length = 477
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 216 VFSGIFCLSGSILIVGSRSARPVNVWRVKSGWGVIW 109
+F F L+ +LIVG W VK+ WG W
Sbjct: 415 IFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNW 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,023
Number of Sequences: 27780
Number of extensions: 278322
Number of successful extensions: 1114
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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