Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0838
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   111   6e-26
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   3.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   3.9  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.8  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   6.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.0  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   9.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  111 bits (268), Expect = 6e-26
 Identities = 53/88 (60%), Positives = 66/88 (75%)
 Frame = +3

Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 434
           ELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V+NAILED+VFP EI+G
Sbjct: 82  ELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIG 139

Query: 435 KRIRVKLDGSQLIKVHLDKNQQTTMNIK 518
           KR R   DG + IKV LD     T++ K
Sbjct: 140 KRTRQATDGRKTIKVFLDNRDANTVDYK 167



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
 Frame = +1

Query: 34  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 207
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 208 MPKLKAFQKIQ 240
            P LKAF K Q
Sbjct: 66  QPLLKAFHKCQ 76



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 482 LRQKPTDYYEHKVDTFQSVYKKLTGREVTFEFP 580
           L  +  +  ++K+ +F SVY KLTG+ VTFEFP
Sbjct: 156 LDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 237 PDQACPELEKKFSGKHVVFVGDRKILPKPSH 329
           P    P LEK     +  +  D+ +LP P+H
Sbjct: 229 PPSLPPHLEKCILNSNTAYKEDQSVLPNPNH 259


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 353 KEATLKDIDLCVQCYPRGLGLPC 421
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 440
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 503 YYEHKVDTFQSVYKKLTG 556
           +YE   DTFQS +KK +G
Sbjct: 188 FYEQVFDTFQSQFKKESG 205


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 371 P*AWPLLFVSNTSFVAGLRQDLTVSN 294
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 502 VCWFLSKCTLMSCEPSNLTLMR 437
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,868
Number of Sequences: 5004
Number of extensions: 46080
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)