Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0838
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 96 2e-20
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 93 1e-19
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 50 2e-06
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580 32 0.43
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.0
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.0
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.0
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.0
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 27 9.3
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/98 (52%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +3
Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 434
ELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V++ ILED+V+PAEIVG
Sbjct: 83 ELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVG 138
Query: 435 KRIRVKLDGSQLIKVHLDKNQQTTMNIKW-TPSSLYTR 545
KRIR +LDG+++IK+ LD ++ K T S++Y R
Sbjct: 139 KRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +1
Query: 34 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 207
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 208 MPKLKAFQKIQI 243
KAF+KI +
Sbjct: 67 YRLRKAFKKIHV 78
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +2
Query: 482 LRQKPTDYYEHKVDTFQSVYKKLTGREVTFEFP 580
L K + E+K++TF +VY++L G++V FE+P
Sbjct: 155 LDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 93.5 bits (222), Expect = 1e-19
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Frame = +3
Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 434
ELEKKFSGK VV V R+I+ P + V RPR+RTLT+V++ ILED+V+PAEIVG
Sbjct: 96 ELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVG 151
Query: 435 KRIRVKLDGSQLIKVHLDKNQQTTMNIKW-TPSSLYTR 545
KR+R LDG +++K+ LD ++ K T SS+Y R
Sbjct: 152 KRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = +1
Query: 88 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQI 243
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHV 91
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 482 LRQKPTDYYEHKVDTFQSVYKKLTGREVTFEFP 580
L K + E+K+DTF SVY++L G++V F++P
Sbjct: 168 LDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +3
Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 434
ELEKKFSGK VVF R+I+ +P +K + PR+RTL +V++ ILED+V ++G
Sbjct: 68 ELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
Length = 1101
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 249 CPELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAE- 425
CP L ++ SGK++V VG HK + ++ T + N +LED + E
Sbjct: 1028 CPNLTEQSSGKYIVLVGGYSTTQVKKHKEIIRLVEETISEDDYTILGNTLLEDDTYLEEA 1087
Query: 426 IVGKRI 443
G R+
Sbjct: 1088 FFGARV 1093
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 94 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 228
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 94 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 228
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 43 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 219
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 220 KAFQKI 237
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 94 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 228
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 360 PRSRTLTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIK 476
P +RTLT+ ++ IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,993
Number of Sequences: 37544
Number of extensions: 307694
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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