Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0838
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               97   8e-21
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   4.1  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.4  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.4  
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              28   7.2  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   9.5  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                27   9.5  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 45/71 (63%), Positives = 59/71 (83%)
 Frame = +1

Query: 28  STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 207
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 208 MPKLKAFQKIQ 240
           +P+++AFQKIQ
Sbjct: 68  VPQIRAFQKIQ 78



 Score = 56.8 bits (131), Expect(2) = 9e-10
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 368
           ELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 84  ELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +2

Query: 509 EHKVDTFQSVYKKLTGREVTFEFP 580
           +HK++TF +VYKKLTG++V FEFP
Sbjct: 131 DHKLETFSTVYKKLTGKDVVFEFP 154



 Score = 23.8 bits (49), Expect(2) = 9e-10
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 480 HLDKNQQTTMNIKW-TPSSLYTR 545
           HLDK QQTT++ K  T S++Y +
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKK 143


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 350 FVSNTSFVAGLRQDLTVSNKDYMFTTE 270
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 64  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 231
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 116  PTSKPNFGSFTLQKLKKLNYTIRS 187
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 402 EDLVFPAEIVGKRIR-VKLDGSQLIKVHLDKNQQTTMNIKWTPSSLYTRS*RD 557
           EDL+     V + +R +  +   L    + +   TTM +KW P  L+T+   D
Sbjct: 40  EDLIIEDSDVAEAVRRIPEEERNLRNFRIVRAIDTTMKMKWLPEELWTKPSED 92


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +2

Query: 95  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 193
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 505 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 398
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 431  RQAHQGQVGRLTAH*GALRQKPTDYYEHKVDTFQSVYKKLTGREVTFEFP 580
            +Q HQGQ  + T      +Q+P    + KV TF   Y+K   +  + E+P
Sbjct: 1806 QQLHQGQRQQSTQQ--QQKQQPRQSLQKKVKTFVPSYEKCPSQVTSDEWP 1853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,966,526
Number of Sequences: 59808
Number of extensions: 349106
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)