Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0838
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   110   9e-25
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    29   3.6  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  110 bits (264), Expect = 9e-25
 Identities = 51/89 (57%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +3

Query: 255 ELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYNAILEDLVFPAEIV 431
           ELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V++A L++LV+PAE+V
Sbjct: 81  ELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVV 140

Query: 432 GKRIRVKLDGSQLIKVHLDKNQQTTMNIK 518
           G+RIRVKLDG ++ KVHLDK+ QT +  K
Sbjct: 141 GRRIRVKLDGKKVYKVHLDKSHQTNVGHK 169



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = +1

Query: 34  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 213
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 214 KLKAFQKI 237
           +LKAF KI
Sbjct: 67  QLKAFHKI 74



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 512 HKVDTFQSVYKKLTGREVTFEFPEP 586
           HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 168 HKIGVFASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 208
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 249 CPELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 368
           CP+L++KF  +     G+R ++ K  H+    N++ R R+
Sbjct: 87  CPDLKQKFEREVAEHNGNRGLVIKTKHQRAQRNREMRHRN 126


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 19  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 189
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 190 I 192
           +
Sbjct: 302 V 302


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 249 CPELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEI 428
           CP L    + +HV  +   KI  K  H  R AN ++      +  + N +L +LV  A I
Sbjct: 255 CPALLVHLNAQHVELLKTTKIFEKTLHWLR-ANAEEIETGMDVRLLIN-LLANLVHFAYI 312

Query: 429 VGKRIRVKL-DGSQLIKVHLDKNQQTTMNIKWTPSSLY 539
             K +  KL + +  + V L +  + T+    T +SL+
Sbjct: 313 NDKTLESKLYEWTWAVGVSLSRCTELTVKHGGTKTSLH 350


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 120 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 34
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,486
Number of Sequences: 27780
Number of extensions: 264116
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)