Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0838
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    33   0.003
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    33   0.003
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    30   0.021
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.35 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   9.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 375 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTMNIKWTPSSLY 539
           L S YN ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T N+ W   S Y
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNL-WVEQSWY 86


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 375 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTMNIKWTPSSLY 539
           L S YN ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T N+ W   S Y
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNL-WVEQSWY 86


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +3

Query: 375 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTMNIKWTPSSLY 539
           L S YN ++  +V   + +   +++KL  SQLI V+L KNQ  T N+ W   S Y
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNL-WVEQSWY 82


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 64  DSFETSISQALVELETNSDLKAQLRE 141
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 482 LRQKPTDYYEHK 517
           +RQ+ T+Y+EH+
Sbjct: 408 MRQRITEYFEHR 419


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 482 LRQKPTDYYEHK 517
           +RQ+ T+Y+EH+
Sbjct: 376 MRQRITEYFEHR 387


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 231 EDPDQACPELEKKFSGKHVVFVGDRK 308
           E+    C E +KK + K V F+ D K
Sbjct: 72  ENECSPCSEKQKKIADKVVQFLIDNK 97


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 231 EDPDQACPELEKKFSGKHVVFVGDRK 308
           E+    C E +KK + K V F+ D K
Sbjct: 72  ENECSPCSEKQKKIADKVVQFLIDNK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,612
Number of Sequences: 438
Number of extensions: 2845
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)