Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0837
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.17
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.1
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.7
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 6.3
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 8.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 8.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 8.3
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 116 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 12
I +MR ELG T RC D QA K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 272 QGAEVIALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNNSPI 135
+G+E I RP K+ S L +P P R RG L+ P+
Sbjct: 116 EGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGRGRPRLHPLPV 161
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 458 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 345
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 520 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 642
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 485 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 366
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.3
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -2
Query: 535 EIDLEVRFDSPIVIAAPMSLTMMLSARET--EAVASATTFSRASPPEAKDLRTRLKMRIS 362
E D V+FDSP++I ++ SA T E + F+R+ KDL+ + S
Sbjct: 264 EQDFNVKFDSPLIIPETVN-----SAGHTVREQLFEVKEFTRS----IKDLKDLYEKANS 314
Query: 361 PSAEPTDAETLGTARTKL 308
D+E LG A+ L
Sbjct: 315 KDIYDKDSEILGEAKAIL 332
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 455 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 351
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 8.3
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -1
Query: 467 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 300
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 168 ERISRSQQFTDFIEQV*DHDVKDA 97
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 533 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 655
+ R++GP V F+ K+P L + ++ + + V +LV+N
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,260
Number of Sequences: 5004
Number of extensions: 47018
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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