Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0837
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1110 + 30973202-30973870                                         30   2.1  
12_01_0204 + 1539859-1540158                                           29   4.9  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.5  
05_03_0478 - 14526180-14526578                                         28   6.5  
03_05_0373 + 23581812-23583293                                         28   6.5  
01_06_0034 + 25769436-25769701,25769749-25769887                       28   8.6  

>04_04_1110 + 30973202-30973870
          Length = 222

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 502 IVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 347
           + + +P S T+  S+R+T A A     ++A  P +  L   L M    +A+P
Sbjct: 103 LAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154


>12_01_0204 + 1539859-1540158
          Length = 99

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 181 YAGSWSPPGASDIINFSGRVTDVK 252
           +AGSW+  G   + +F GRVT V+
Sbjct: 38  HAGSWNGEGQGGLAHFGGRVTRVR 61


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 67  RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 162
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 547 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 651
           SW  RQ+   ED    DG R    RGQ     RRP RH
Sbjct: 54  SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +3

Query: 348 GSAEGEIRIFSRVLRSFASGGLA-----LENVVAEATASVSLADNIIVSDIGAAITIGES 512
           GSA+G ++++ R     ASGG A     LE V+ E  ++V+    I VS  G  + +G S
Sbjct: 282 GSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTA---IAVSAEGRVVYVGSS 338

Query: 513 N 515
           +
Sbjct: 339 D 339


>01_06_0034 + 25769436-25769701,25769749-25769887
          Length = 134

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 485 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 375
           +V  +D +C+G+G G   +    G ++   RPQ A E
Sbjct: 16  EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,904,527
Number of Sequences: 37544
Number of extensions: 354968
Number of successful extensions: 1153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)