Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0837
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   7.8  

>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = -2

Query: 508 SPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 329
           +P+V      LT   SAR +   AS       +P   +++R       S +  P    T 
Sbjct: 154 TPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVTP 213

Query: 328 GTARTKLSRVP 296
           GT+    SR+P
Sbjct: 214 GTSSNHRSRLP 224


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 460 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVP 296
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEP 743


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 406 PEAKDLRTRLKMRISPSAEPTDAETLGT 323
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical
           protein T20B6.2 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/101 (20%), Positives = 49/101 (48%)
 Frame = -2

Query: 682 YRSSNLQ*SVDDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDSP 503
           Y SSN+     D+L ++L+N   L  +V  +  ++   ++DG  +  S++   E+    P
Sbjct: 67  YNSSNIIIISVDKLTNILENMQSLARLVNGISLEI--GLMDG--SIPSDDAIAELLHMGP 122

Query: 502 IVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTR 380
           + +   +S+    +++  + + + +   ++SP E   L  R
Sbjct: 123 VKLQELISMDTAAASKSIKDLGTLSGTLQSSPAEVTTLENR 163


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 34   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 177
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 34   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 177
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,470
Number of Sequences: 27780
Number of extensions: 278508
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)