Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0836
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998... 30 1.8
01_06_0125 + 26711157-26713297,26715026-26715206 30 1.8
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849... 30 2.4
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 2.4
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 2.4
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 3.1
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 28 7.2
03_05_0940 + 28998492-28998689,29004230-29004430,29004504-290047... 28 7.2
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 9.6
>12_01_0983 -
9979572-9980570,9980878-9981544,9982864-9983217,
9983334-9983668
Length = 784
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 569 DHDPCTVPCSFLCWSQ*VRALEVAVRYTAALNGSSPSEQINK 444
+H ++ C F WS V A E AVR A+ + P+ +IN+
Sbjct: 725 EHLEVSINCHFATWSG-VEAAEAAVRNAASAHPGCPTVEINR 765
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -2
Query: 775 SERFEDPFSERTDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTG 596
+ R E+ ++ GE GVD I ++ S D + +E GRG + ++ D G
Sbjct: 98 ARRDEEEVEGSSEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEG 157
Query: 595 AE 590
E
Sbjct: 158 DE 159
>08_02_1249 -
25584175-25584325,25584520-25584625,25584801-25584963,
25585047-25585241,25585286-25585548,25585654-25585774
Length = 332
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 593 RICYQSRRDH-DPCTVPCSFLCWSQ*VRALEVAVRYTAALNGS 468
+ CY + DH P + SFL W+ +R VA +A+NG+
Sbjct: 97 KACYTNCEDHFHPAIMRLSFLSWNSDLRCHLVAAVLDSAINGT 139
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 199 LKGSGSW*EQYQRTVGTIDSRWV 131
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 199 LKGSGSW*EQYQRTVGTIDSRWV 131
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 659 RRQGHPSQYCRSRGHQPGPNRR 594
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>11_04_0305 - 16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 628 VVAATSPDQTGAEFVISHD---AIMTLVLFP---AVFFVGHNEFELW 506
+V A + + G+EF++ HD +T FP +FFVG E+E W
Sbjct: 894 IVRAPAIKRVGSEFLLCHDHGHHSLTAKAFPRLQVLFFVGMVEWEEW 940
>03_05_0940 +
28998492-28998689,29004230-29004430,29004504-29004718,
29004868-29005121,29005253-29005305,29005675-29006139
Length = 461
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = -2
Query: 607 DQTGAEFVISHDAIMTLVLFPAVFFVGHNEFEL--------WRLPSDTLPP 479
++TG ++S D + LV F HNEFE+ W +P+ T+PP
Sbjct: 328 EKTGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPP 378
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 335 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 445
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,498,101
Number of Sequences: 37544
Number of extensions: 557594
Number of successful extensions: 1513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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