Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0836
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.92
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 31 0.92
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 1.2
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 30 2.1
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 29 2.8
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 2.8
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 2.8
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna hel... 28 6.5
AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein. 28 6.5
U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical pr... 28 8.6
U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical pr... 28 8.6
U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical pr... 28 8.6
>Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical
protein T08G3.2 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.53
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +1
Query: 106 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIADLPVAVSPVK 285
S V + ++LP+LN F GI L + F + YRR + D+ ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325
Query: 286 YLMFTLLLTIPNSLRRI 336
+ + L+ IP + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 347 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 448
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 371 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 502
C P+RPK P G P CR PG R G NY + ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 590 FCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNANDIYPVVLTSISSFTE 754
FCAG + GG D D G P + L G++S+G A P + T ++ +
Sbjct: 196 FCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254
Query: 755 WI 760
WI
Sbjct: 255 WI 256
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 347 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 442
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 125 YSYPS*INGSNSALVLFSPTTTTFQLL 205
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -1
Query: 641 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRALEVAVRYTAALNGSS 465
+++C + P ICY S+RD T C C+ V + +++N +
Sbjct: 382 TEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEA 441
Query: 464 PSEQINKNTLGYY---DTLLDNSTLL 396
P E+ LGYY D L N LL
Sbjct: 442 PEEEKRLGKLGYYTYCDENLCNGDLL 467
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/85 (25%), Positives = 31/85 (36%)
Frame = +2
Query: 395 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPKLELIVTNKENCREQYKGHDRV 574
PAG ++ T C N PGY+ + G QC P + N NC D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319
Query: 575 VTDNKFCAGLVRAGGRDYDNTDLGA 649
+T F Y + LG+
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGS 344
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 653 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 549
+GH RGH P P R R Y + HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 653 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 549
+GH RGH P P R R Y + HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 216 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 37
+E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H
Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963
Query: 36 SY 31
Y
Sbjct: 964 DY 965
>AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna
helicase (yeast) homologprotein 1 protein.
Length = 677
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 314 MVNSKVNIRYFTGLTATGRSAIMRR 240
++NS+ ++ +FTG TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280
>AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein.
Length = 677
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 314 MVNSKVNIRYFTGLTATGRSAIMRR 240
++NS+ ++ +FTG TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280
>U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical
protein F41H10.6a protein.
Length = 863
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
S+V +R W C P + L W I+ + + +Y ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404
>U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical
protein F41H10.6c protein.
Length = 957
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
S+V +R W C P + L W I+ + + +Y ++RR++ GEI
Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406
>U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical
protein F41H10.6b protein.
Length = 955
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRGSSRRSEPGEI 287
S+V +R W C P + L W I+ + + +Y ++RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,240,170
Number of Sequences: 27780
Number of extensions: 452959
Number of successful extensions: 1188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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