Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0835
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   2.4  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   2.4  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    27   4.2  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    27   7.4  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = -3

Query: 296 TDNREIYEPNEEIIFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL 165
           T++ ++ +  EE+  +K+ + D L  VE  Q+N  + VE+++YL
Sbjct: 308 TESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEVEELVYL 351


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 91   ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRL 240
            IS + R F+   Y++ + F  +  +KY+I ST   R SW      +L ++
Sbjct: 1021 ISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKI 1070


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 284 EIYEPNEEIIFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL 165
           +I EP  ++I +K + L  LNI     LNL + ++ + YL
Sbjct: 233 QILEPISKLINLKRLELSFLNISYPLDLNLFSSLKSLTYL 272


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = -3

Query: 248 KYMSLDNLNIVEVFQLNLKNVVEKMLYLLQ*IL*KIEFLVYKNLMKGL 105
           K + L+N + V + Q++L+N+V++ L  +   +  ++ L +KN++K L
Sbjct: 36  KGLDLENGDFVAIKQVSLENIVQEDLNTIMQEIDLLKNLNHKNIVKYL 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,597,674
Number of Sequences: 28952
Number of extensions: 103379
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)