Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0834
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    37   0.008
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    32   0.23 
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    28   2.9  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    27   5.0  
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20...    27   5.0  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 29/106 (27%), Positives = 41/106 (38%)
 Frame = +2

Query: 8   KTSGAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGEGITSCNKNQTRKIIICVITG 187
           K  G  ++ RCTGV I   G N   +I T      DFHGE      K     +     T 
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGELHNPALKLSV-SMPNKTTTE 208

Query: 188 GRTTCESARIGTTALLISAVKHYAFRFEGWGSRCNYTETLELVSQG 325
           GR    +   G    L+  +  Y      +GS  NY + +  + +G
Sbjct: 209 GRLLFYNVHYGIA--LLEVMGDYKLEVPSFGSGTNYGQVIFALGRG 252


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 62  AGTNFSNEICTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTTCESARIGTTALLI 238
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + R+      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 239 SAV-KHYAFRFEGW 277
           +AV   YA  F  W
Sbjct: 89  NAVPSTYAIFFTPW 102


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 65  PPAGFEHRCIASTRMHRTSYP 3
           PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 252 IMRFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 383
           + + G+ G + V+   R   + L +GG     ++MG + HL +G
Sbjct: 352 LAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>01_01_0026 +
           201042-201110,201252-201359,202511-202639,203164-203440,
           203543-203647,203730-203875,204042-204149,204290-204378,
           204552-205098
          Length = 525

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 99  C*VHISLE--KLVPACGIRTPVHRFNTNAPDVLSF 1
           C V  SL+   + PACG + P H  + + P +L+F
Sbjct: 335 CLVKDSLQFGSIAPACGAKDPHHLDSLSEPQILTF 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,386
Number of Sequences: 37544
Number of extensions: 309124
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)