Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0834
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 30   0.96 
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   8.9  
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               27   8.9  

>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 26  VLKRCTGVRIPQAGTNFSNEICTQQMFTID---FHGEGITSCNKNQTRKIIICVITGGRT 196
           VL+ C   RI  +  N  N  C   +F+     ++G  +  C+   +     CV  GG+ 
Sbjct: 699 VLQDCVNSRIAMSRINTENPQCRALVFSASTELYNGTKVCECDPEGSTNPTQCVAYGGQC 758

Query: 197 TCESARIG 220
            C+    G
Sbjct: 759 PCKPGVAG 766


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
 Frame = +2

Query: 179 ITGGRT---TCESARIGTTALLISA-------VKHYAFRFEGWGSRCNYTETLELVSQGG 328
           I GGR+   TC +    TT L+ S+       ++ YA+R++G  SR N     +    G 
Sbjct: 182 ICGGRSHDHTCPAGHFCTTYLIESSSPMISFGLEVYAYRYQGCNSRANLDIPYQASVSGD 241

Query: 329 W 331
           W
Sbjct: 242 W 242


>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 301 LSIVTTATPPFKPKRIMLHGRNKQGGGTYPRGLTSGPTTSNYANYN 164
           L++  T   PF P++      ++   GT      S PTTSNY   N
Sbjct: 251 LALGPTPLVPFLPQKKRFASYHQVASGTENGLPPSAPTTSNYGTMN 296


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 WGSRCNYTETLELVSQGGWRIYVVD 349
           WGS C +++ + + + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 134 TSCNKNQTRKIIICVITGGRTTCESAR 214
           T+C+K + R   IC + GGR  C   R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,122
Number of Sequences: 59808
Number of extensions: 338195
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)