Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0834
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32680.1 68415.m03995 disease resistance family protein conta...    28   2.4  
At5g53330.1 68418.m06628 expressed protein                             28   3.2  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   5.5  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   5.5  
At1g79190.1 68414.m09233 expressed protein                             27   7.3  
At5g09670.2 68418.m01119 loricrin-related contains weak similari...    26   9.7  
At5g09670.1 68418.m01118 loricrin-related contains weak similari...    26   9.7  
At4g38640.1 68417.m05469 choline transporter-related contains we...    26   9.7  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    26   9.7  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   9.7  

>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 86  ICTQQMFTIDFHGEGITSCNKNQ 154
           +C   +FT++FH  GI +C  +Q
Sbjct: 19  VCHSSIFTLNFHFTGIVACRPHQ 41


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 241 RNKQGGGTYPRGLTSGPTTS 182
           RNK GG +YPR +   P+TS
Sbjct: 6   RNKSGGPSYPRPMYGPPSTS 25


>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 172 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 35
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 172 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 35
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 215 IGTTALLISAVKHYAFRFEGWGSRCNYTETLELVSQGGWRIYVVD--VYGL 361
           +G    L+S V+   +  E W S CN T + +LV Q      +++  ++GL
Sbjct: 603 LGFVRKLVSEVRVKEYNGEDWQSWCNRTGSGQLVRQAATAACILNEMIFGL 653


>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 140 CNKNQTRKIIICVITGGRTTCESARIGTTALLISAVKHYAFRF-EGWGSRCNYTETLELV 316
           CNK    K   C   GG   CE   +G T    SA     F    G G RC + E  +  
Sbjct: 186 CNKGAESKTTFCKTHGGGKRCE--HLGCTK---SAEGKTDFCISHGGGRRCEFLEGCDKA 240

Query: 317 SQG 325
           ++G
Sbjct: 241 ARG 243


>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 546

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 140 CNKNQTRKIIICVITGGRTTCESARIGTTALLISAVKHYAFRF-EGWGSRCNYTETLELV 316
           CNK    K   C   GG   CE   +G T    SA     F    G G RC + E  +  
Sbjct: 186 CNKGAESKTTFCKTHGGGKRCE--HLGCTK---SAEGKTDFCISHGGGRRCEFLEGCDKA 240

Query: 317 SQG 325
           ++G
Sbjct: 241 ARG 243


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 181 NYANYNFAGLIFITRCYS--FTVEVNREHLLSTYFIRKIGTRL 59
           N    NFA +     C S   T E+ R +LLS  F+  + TR+
Sbjct: 413 NKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 252 IMRFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 383
           + + G+   + V+ + R   + L +GG     ++MG S HL +G
Sbjct: 317 LAKTGILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 57   RRRVPIFLMKYVLNKCSRLTST 122
            ++RVP  +M+ VL  C+RLT +
Sbjct: 1564 KQRVPAMIMQAVLQLCARLTKS 1585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,126
Number of Sequences: 28952
Number of extensions: 235544
Number of successful extensions: 475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)