Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0832
         (834 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopheri...    38   0.23 
UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_P32568 Cluster: Protein SNQ2; n=9; Saccharomycetales|Re...    33   8.8  

>UniRef50_UPI0000DB70D1 Cluster: PREDICTED: similar to Karyopherin  3
            CG1059-PA; n=1; Apis mellifera|Rep: PREDICTED: similar to
            Karyopherin  3 CG1059-PA - Apis mellifera
          Length = 1040

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 15/39 (38%), Positives = 28/39 (71%)
 Frame = +1

Query: 1    PVYAQMVALLRQIQSNAELFNSCLMTLSNDHKEALQIAL 117
            PV  ++++++RQIQ+N  +F +C+  L+ D ++AL  AL
Sbjct: 996  PVMGRILSIVRQIQNNESMFQACINALTADQQQALHEAL 1034


>UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 249

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 379 ISQQFESAQYKHLYENY-YYSSRKKTINKWSDVL 281
           +  +   ++YK+ Y +Y YY+S+KK I KWS ++
Sbjct: 204 VLNKISKSEYKNYYGSYDYYNSKKKYIKKWSQLI 237


>UniRef50_P32568 Cluster: Protein SNQ2; n=9; Saccharomycetales|Rep:
            Protein SNQ2 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1501

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 123  IVTTPYRRPAPYSGYSRYL*IIARYFNGITCIYCESSRS**LFMNYCYNYKIVNTSLHLL 302
            ++ T Y    PY  +   +  ++ YF     I+ E+SRS   F+NYC  +++    L L+
Sbjct: 1265 VLITQYLSELPYHLFFSTIFFVSSYFP--LRIFFEASRSAVYFLNYCIMFQLYYVGLGLM 1322

Query: 303  IVF 311
            I++
Sbjct: 1323 ILY 1325


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,055,691
Number of Sequences: 1657284
Number of extensions: 13899520
Number of successful extensions: 30560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30546
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72553824147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)