Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0832
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   29   3.5  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                28   8.1  

>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 528 LCSMLCCFVNIYIIAWSVYILF 593
           + S LCC   I I+AW+ Y LF
Sbjct: 372 MISYLCCIYYIVILAWTFYYLF 393


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 146 PCTLFWLLPLLINYCTLF*WHNMY 217
           P    W+LP++  YC++   HNM+
Sbjct: 349 PLASSWILPVIQGYCSIVHCHNMF 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,614,985
Number of Sequences: 59808
Number of extensions: 457064
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)