Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0832
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 406 ISPGINR*GISQQFESAQYKHLYENYYYSSRKKTINKWSDVL 281
           + P      + Q+F   Q  +  +NY+YS    + +  SDVL
Sbjct: 117 VQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVL 158


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 310 SFEKNNNSFHISAYIGLIRIAVIYLTGLCLVKWCDCISPYLRS 438
           +F      FHI   I    + ++ L G C V W    S  LR+
Sbjct: 48  AFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRT 90


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 310 SFEKNNNSFHISAYIGLIRIAVIYLTGLCLVKWCDCISPYLRS 438
           +F      FHI   I    + ++ L G C V W    S  LR+
Sbjct: 48  AFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRT 90


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 636 LHYNLTVENKQTVSCKLGCLPTFD 707
           + YN   EN QT + K+G  P++D
Sbjct: 535 IQYNTRAENHQTGTAKMG--PSYD 556


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 537 MLCCFVNIY---IIAWSVYIL 590
           +L C+ NIY   I+AW+++ L
Sbjct: 106 VLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 537 MLCCFVNIY---IIAWSVYIL 590
           +L C+ NIY   I+AW+++ L
Sbjct: 159 VLSCWTNIYYIIILAWALFYL 179


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 133 VVTMWTELSEELPCGRYLKS*DM 65
           +VTM+T L  ++P   Y+K+ D+
Sbjct: 242 LVTMFTGLKSDIPPVAYVKALDV 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,470
Number of Sequences: 438
Number of extensions: 4635
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)