Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0832
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    31   0.94 
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   3.8  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    29   5.0  
At5g56800.1 68418.m07088 hypothetical protein                          28   6.6  
At3g54830.1 68416.m06074 amino acid transporter family protein b...    28   8.8  

>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 117 VHIVTTPYRRPAPYSGYSRYL*I--IARYFNGITCIY 221
           ++I    Y  P PY  YS Y  +  I  Y NGI CIY
Sbjct: 49  INIFIHSYTSPVPYPKYSTYDTVGQIMGYCNGIVCIY 85


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 636 LHYNLTVENKQTVSCKLGCLPTFDKI 713
           L +N+  EN +TVS  LGC  T D++
Sbjct: 243 LDFNIEAENTRTVSGNLGCKKTNDEV 268


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 826 YFYFC*TNMCIQYIYN*IKLLLINTKFC*NDHLVLRVV 713
           YFY C ++ C+ YIY  +K    +T FC    +++  +
Sbjct: 24  YFYICKSHFCLPYIYTTLK----STIFCPKKFIIMETL 57


>At5g56800.1 68418.m07088 hypothetical protein
          Length = 344

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 742 SKTSCLLEVILFNYICIVYTYLFNKNKNID 831
           +K SCL +V +F+ +CI    +F K +N+D
Sbjct: 305 AKASCL-KVAIFSSVCIEKNLIFKKLENVD 333


>At3g54830.1 68416.m06074 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 546

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 472 FEMTKDGLI*QNQTDNALRYVVCYAALLISTLLLGVCTYYFG 597
           F M+ + LI  N   +    +   +AL ISTLL+G+   +FG
Sbjct: 439 FAMSLEELIPSNYGKSRFYAIAIRSALAISTLLVGLAIPFFG 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,963
Number of Sequences: 28952
Number of extensions: 303550
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)